Charles V. Schaefer, Jr.
    School of Engineering and Science
 

Graduate Courses

  All Graduate courses are 3 credits except where noted. See the registrar's web site for the current course offerings. Select "Course Schedules" from the menu.   600-999  

500-Level Courses

Ch 500 Physical Chemistry Review
Review of undergraduate physical chemistry by means of problem solving; atomic spectra; structure of atoms and molecules; thermodynamics; changes of state; solutions; chemical equilibrium; kinetic theory of gases; chemical kinetics and electrochemistry. This course may not be counted toward the master’s degree and is not open to undergraduate students.

Ch 520 Advanced Physical Chemistry
The elements of quantum mechanics are developed and applied to chemical systems. Valence bond theory and molecular orbital theory of small molecules; introduction to group theory for molecular symmetry; fundamental aspects of chemical bonding and molecular spectra.

Ch 540-541 Advanced Organic Laboratory I-II*
Your needs and interests will be considered in the assignment of typical advanced preparations, small research problems and special operations.
Prerequisites:  one year of organic laboratory. Laboratory Fee: $60. Fall and spring semesters.

Ch 561 Instrumental Methods of Analysis
Primarily a laboratory course, with some lecture presenting the principles and applications of contemporary instrumental analytical methods, with a focus on spectroscopy and separations. Laboratory practice explores ultraviolet, visible and infrared spectrophotometry; atomic absorption spectroscopy; nuclear magnetic resonance spectrometry; gas-liquid and high-performance liquid chromatography and mass spectrometry. These instrumental techniques are utilized for quantitative and qualitative analyses of organic, inorganic, biological and environmental samples. Laboratory fee: $60.

Ch 580 Biochemistry I - Cellular Metabolism and Regulation
Discussions include metabolic pathways in biosynthesis and catabolism of biomolecules, including carbohydrates, proteins, lipids and nucleic acids. The hormonal regulation of metabolism as well as vitamin metabolism is presented.
Prerequisites:  Ch 242 or equivalent.

Ch 582 Biophysical Chemistry
The relationship of the chemical and physical structure of biological macromolecules to their biological functions as derived from osmotic pressure, viscosity, light and X-ray scatting, diffusion, ultracentrifugation and electrophoresis. The course is subdivided into: 1) properties, functions and interrelations of biological macromolecules, e.g., polysaccharides, proteins and nucleic acids; 2) correlation of physical properties of macromolecules in solution; 3) conformational properties of proteins and nucleic acids and 4) aspects of metal ions in biological systems.
Prerequisites:  Ch 421 or equivalent.

Ch 583 Physiology
Fundamentals of control processes governing physiological systems analyzed at the cellular and molecular level. Biological signal transduction and negative feedback control of metabolic processes. Examples from sensory, nervous, cardiovascular and endocrine systems. Deviations that give rise to abnormal states; their detection, the theory behind the imaging and diagnostic techniques such as MRI, PET, SPECT; the design and development of therapeutic drugs. The principles, uses and applications of biomaterials and tissue engineering techniques; problems associated with biocompatibility. Students (or groups of students) are expected to write and present a term project.
Prerequisites:  Ch 382 or equivalent.

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Courses Numbered 600 and Above

Ch 610 Advanced Inorganic and Bioinorganic Chemistry
A systematic treatment of the bonding and reactivity of inorganic substances; molecular shape and electron charge distribution of main-group and coordination compounds, including valence- bond theory and a group theoretical approach to molecular orbital theory; organometallic chemistry; the solid state; and the role of inorganic compounds in biological processes and the environment.

Ch 620 Chemical Thermodynamics and Kinetics
Applications of the laws of thermodynamics to solutions, electrolytes and polyelectrolytes, binding and biological systems; statistical thermodynamics is developed and applied to spectroscopy and transition state theory; chemical kinetics of simple and complex reactions, enzyme and heterogeneous catalysis and theories of reaction rates.

Ch 621 Quantum Chemistry*
Theorems and postulates of quantum mechanics; operator relationships; solutions of the Schrödinger equation for model systems; variation and perturbation methods; pure spin states; Hartree-Fock self-consistent field theory; applications to many-electron atoms and molecules.
Prerequisites:  Ch 520 or equivalent.

Ch 622 Molecular Spectroscopy*
Theoretical foundations of spectroscopic methods and their application to the study of molecular structure and properties. Theory of the absorption and emission of radiation; line spectra of complex atoms; group theory and rotational, vibrational, and electronic spectroscopy of diatomic and polyatomic molecules.

Ch 623 Chemical Kinetics*
A detailed discussion of the kinetics and mechanism of complex reactions in the gaseous and liquid phases. Topics include stationary and nonstationary conditions; chain reactions; photo and radiation-induced reactions; and reaction rate theories.

Ch 624 Statistical Mechanics*
Classical and quantum mechanical preliminaries; derivation of the laws of thermodynamics; applications to monoatomic and polyatomic gases and to gaseous mixtures; systems of dependent particles with applications to the crystalline solid, the imperfect gas and the cooperative phenomena; electric and magnetic fields; degenerate gases.
Prerequisites:  Ch 620 or equivalent.

Ch 640-641 Advanced Organic and Heterocyclic Chemistry I-II
An advanced course in the chemistry of carbon compounds, with special reference to polyfunctional compounds, heterocycles, techniques of literature survey, stereochemical concepts, physical tools for organic chemists. Fall and spring semester.

Ch 642 Synthetic Organic Chemistry
A survey of important synthetic methods with emphasis on stereochemistry and reaction mechanism.
Prerequisites:  Ch 640.

Ch 645 Chemistry of Heterocyclic Compounds*
A survey of the more important classes of heterocyclic compounds, their physical and chemical properties, and methods of synthesis.
Prerequisites:  Undergraduate Organic Chemistry.

Ch 646 Chemistry of Natural Products
Structure, synthesis and biogenesis of antibiotics, alkaloids, hormones and other natural products.
Prerequisites:  Undergraduate Organic Chemistry.

Ch 647 Chemistry and Pharmacology of Drugs
Discussion at the molecular level of drug receptor interaction, influence of stereochemistry and physiochemical properties on drug action, pharmacological effects of structural features, mechanism of drug action, metabolic rate of drugs in animals and man, drug design. The application of newer physical tools and recent advances in methods for pharmacological studies will be emphasized.
Prerequisites:  Undergraduate Organic Chemistry.

Ch 650 Spectra and Structure Determination
An intensive course on the interpretation of spectroscopic data; emphasis is on the use of modern spectroscopic techniques, such as NMR (13C, D, 15N, H), mass (including CI), laser-Raman, ESCA, ORD, CD, IR, UV for structure elucidation. Special attention is given to the application of computer technology in spectral work. A course designed for practicing chemists in analytical, organic, physical and biomedical areas. Extensive problem solving. No laboratory.

Ch 660 Advanced Instrumental Analysis
Advanced treatment of the theory and practice of spectrometric methods (mass spectrometry, nuclear magnetic resonance, etc.) and electroanalytical methods with emphasis on Fourier Transform techniques (FTIR, FTNMR, etc.) and hyphenated methods (gc-ms, etc.), the instrument-sample interaction and signal sampling. A survey of computational methods such as factor analysis and other chemometric methods is also included.
Prerequisites:  Undergraduate Instrumental Analysis with laboratory, or Ch 561.

Ch 661 Advanced Instrumental Analysis Laboratory*
Your needs and interests are considered in the assignment of work on one or more of the following: NMR spectrometry, mass spectrometry, electrochemical methods, infrared, ultraviolet and visible spectrophotometry. Laboratory Fee: $60.

Ch 662 Separation Methods in Analytical and Organic Chemistry
An advanced course applying principles and theory to problems in chemical analysis. Theory of separations, including distillation, chromatography and ultracentrifugation; heterogeneity and surface effects; sampling and its problems.

Ch 663 Design of Chemical Instrumentation*
A practical treatment of the mechanical, electronic and optical devices used in the construction of instruments for research and chemical analysis and control; motors, light sources and detectors, servomechanisms, electronic components and test equipment, vacuum and pressure measuring devices, and overall design concepts are among the topics treated. Laboratory fee: $60.

Ch 664 Computer Methods in Chemistry
Discusses computational chemistry topics, including energy minimization, molecular dynamics, solvation mechanics and electronic structure calculations. Applications in drug design and receptors will be discussed.
Prerequisites:  Ch 321 or equivalent.

Ch 665 Chemometrics*
Application of chemometric techniques to problems in analytical, physical and organic chemistry, with emphasis on spectroscopic measurements. Includes optimization, analysis of variance, pattern recognition, factor analysis, experimental design, etc.

Ch 666 Modern Mass Spectrometry (3-4-4)
A comprehensive hands-on course covering both fundamentals and modern aspects of mass spectrometry with emphasis on biological and biochemical applications. Topics include: contemporary methods of gas phase ion formation [electron ionization (EI), chemical ionization (CI), inductively coupled plasma (ICP), fast atom bombardment (FAB), plasma desorption (PD), electrospray (ESI), atmospheric pressure chemical ionization (APCI), matrix assisted laser desorption ionization (MALDI), detection (electron and photomultipliers, array detectors) and mass analysis [magnetic deflection, quadrupole, ion trap, time of flight (TOF), Fourier-transform (FTMS)]. Detailed interpretation of organic mass spectra for structural information with special emphasis on even-electron-ion fragmentation. Qualitative and quantitative applications in environmental, biological, pharmacological, forensic, geochemical sciences.

Ch 668 Computational Biology
Topics at the interface of biology and computer technology will be discussed, including molecular sequence analysis, phylogeny generation, biomolecular structure simulation and modeling of site-directed mutagenesis.
Prerequisites:  Ch 321, Ch 580 or equivalent.

Ch 670 Synthetic Polymer Chemistry
Mechanisms and kinetics of organic and inorganic polymerization reactions; condensation, free radical and ionic addition, stereoregular polymerizations; copolymerizations; the nature of chemical bonds and the resulting physical properties of high polymers.

Ch 671 Physical Chemistry of Polymers
Physio-chemical aspects of polymers, molecular weight distributions, solution characterization and theories, polymer chain configuration, thermodynamics of polymer solutions, the amorphous state, the crystalline state.

Ch 672 Macromolecules in Modern Technology
The course covers recent advances in macromolecular science, including polyelectrolytes and water-soluble polymers, synthetic and biological macromolecules at surfaces, self-assembly of synthetic and biological macromolecules, and polymers for biomedical applications.

Ch 673 Special Topics in Polymer Chemistry*
Recent developments in polymer science will be discussed, e.g., physical measurements, polymer characterization, polymerization kinetics, morphology. Topics will vary from year to year and specialists will participate.

Ch 674 Polymer Functionality
Topics at the interface of polymer chemistry and the uses of polymers, focusing on areas where polymers have made a particularly strong contribution, such as in biomedical engineering and pharmaceutical engineering. Synthesis and properties of biopolymers; polymers whose properties change with the environment ("smart polymers"); functional applications in tissue and cell engineering; biosensors and drug delivery.
Prerequisites:  Undergraduate Organic Chemistry.

Ch 678 Experimental Microbiology
Discussions in medical, industrial and environmental microbiology will include bacteriology, virology, mycology, parasitology and infectious diseases. Includes experimental laboratory instruction. Laboratory fee: $60.
Prerequisites:  Ch 382 or equivalent.

Ch 681 Biochemistry II - Biomolecular Structure and Function
Discusses the physical and structural chemistry of proteins and nucleotides, as well as the functional role these molecules play in biochemistry. Extensive use of known X-ray structural information will be used to visualize the three- dimensional structure of these biomolecules. This structural information will be used to relate the molecules to known functional information.
Prerequisites:  Ch 242 or equivalent.

Ch 682 Biochemical Laboratory Techniques
Students will work actively in small collaborative groups to solve a unique research project that encompasses the purification, analysis of purity, kinetics and structure-function analysis of a novel recombinant protein. Techniques in protein purification, gel electrophoresis, peptide digest separation, ligand binding, steady-state and stopped-flow kinetics, and molecular simulation will be explored.
Prerequisites:  admission into the graduate Chemical Biology program. Laboratory fee: $60.

Ch 684 Molecular Biology Laboratory Techniques
This laboratory course introduces essential techniques in molecular biology and genetic engineering in a project format. The course includes aseptic technique and the handling of microbes; isolation and purification of nucleic acids; construction, selection and analysis of recombinant DNA molecules; restriction mapping; immobilization and hybridization of nucleic acids; and labeling methods of nucleic acid probes. Laboratory fee: $60.
Prerequisites:  Ch 484 or equivalent.

Ch 685 Medicinal Chemistry
A few topics of timely interest will be treated in depth; recent chemical developments will be surveyed in fields such as antibiotics, cancer chemotherapy, CNS agents, chemical control of fertility, steroids and prostaglandins in therapy, etc.
Prerequisites:  Ch 242 or equivalent.

Ch 686 Immunology
The cells and molecules of the immune system and their interaction and regulation; the cellular and genetic components of the immune response, the biochemistry of antigens and antibodies, the generation of antibody diversity, cytokines, hypersensitivities and immunodeficiencies (i.e. AIDS); transplants and tumors. Use of antibodies in currently emerging immunodiagnostic techniques such as ELISA, disposable kits, molecular targets, development of vaccines utilizing molecular biological techniques such as recombinant and subunit vaccines. Students (or groups of students) are expected to write and present a term project.
Prerequisites:  Ch 381 or equivalent.

Ch 687 Molecular Genetics
This course is a modern approach to the study of heredity through molecular biology. Primary emphasis is on nucleic acids, the molecular biology of gene expression, molecular recognition and signal transduction, and bacterial and viral molecular biology. The course will also discuss recombinant DNA technology and its impact on science and medicine.
Prerequisites:  Ch 484 or equivalent.

Ch 688 Methods in Chemical Biology
A discussion of the theories underlying various techniques of molecular biology which are used in the biotechnology industry. Topics include all recombinant DNA techniques; DNA isolation and analysis; library construction and screening; cloning; DNA sequencing; hybridization and other detection methods; RNA isolation and analysis; protein isolation and analysis (immunoassay, ELISA, etc.); transgenic and ES cell methods; electrophoresis (agarose, acrylamide, two dimensional and SDS-PAGE); column chromatography; and basic cell culture including transfection and expression systems.
Prerequisites:  Undergraduate biology, especially cell biology (Ch 381 or equivalent).

Ch 689 Cell Biology Laboratory Techniques
Laboratory practice in modern biological research will be explored. Techniques involving gene and protein cellular probes, ELISA, mammalian cell culturing, cell cycle determination, differential centrifugation, electron microscopy, and fluorescent cellular markets will be addressed.
Prerequisites:  admission into the graduate Chemical Biology program and Ch 381 or equivalent. Laboratory fee: $60.

Ch 700 Seminar in Chemistry
Lectures by department faculty, guest speakers and doctoral students on recent research. Enrollment during the entire period of study is required of all doctoral students. .5 credit, pass/fail. Must be taken every semester.

Ch 720-721 Selected Topics in Chemical Physics I-II*
Topics of current interest selected by you are to be investigated from an advanced point of view.

Ch 722 Selected Topics in Physical Chemistry*
Topics selected to coincide with research interests current in the department.

Ch 740 Selected Topics in Organic Chemistry*
Selected topics of current interest in the field of organic chemistry will be treated from an advanced point of view; recent developments will be surveyed in fields such as reaction mechanisms, physical methods in organic chemistry, natural products chemistry, biogenesis, etc.

Ch 760 Chemoinformatics
This advanced course in computational chemistry builds on the methods developed in Ch 664. Students will analyze and design combinatorial libraries, develop SAR models and generate calculated molecular properties. The hands-on course will use both PC and Silicon Graphics computers. Software such as that from Oxford Molecular, Tripos and Oracle will be used, as will MSI software, such as INSIGHT/DISCOVER, Catalyst and Cerius 2.
Prerequisites:  Ch 664 or equivalent.

Ch 780-781 Selected Topics in Biochemistry I-II*
Topics of current interest in biochemical research are discussed, such as: enzyme chemistry, biochemical genetics and development, cellular control mechanism, biochemistry of cell membranes, bioenergetics and microbiology.

Ch 782 Selected Topics in Bioorganic Chemistry*
Topics of timely interest will be treated in an interdisciplinary fashion; recent developments will be surveyed in fields such as biosynthesis, radioactive and stable isotope techniques, genesis of life chemicals, nucleic acids and replication, genetic defects and metabolic errors.

Ch 800 Special Research Problems in Chemistry*
One to six credits. Limit of six credits for the degree of Master of Science.

Ch 801 Special Problems in Chemistry*
One to six credits. Limit of six credits for the degree of Doctor of Philosophy.

Ch 900 Thesis in Chemistry*
For the degree of Master of Science, five to ten credits with departmental approval.

Ch 960 Research in Chemistry*
Original experimental or theoretical research that may serve as the basis for the dissertation required for the degree of Doctor of Philosophy. The work will be carried out under the guidance of a faculty member. Hours and credits to be arranged.

*by request

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